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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs5026894 chr8:3246053 G/A CSMD1 chr8:2792875-4852494:- -0.32 -6.07 2.61E-9 Box Plot
THCA rs5026895 chr8:3246096 G/A CSMD1 chr8:2792875-4852494:- -0.33 -6.18 1.35E-9 Box Plot
THCA rs5026896 chr8:3246201 T/A CSMD1 chr8:2792875-4852494:- -0.55 -10.3 1.35E-22 Box Plot
THCA rs5029571 chr8:11213389 C/T SGK223 chr8:8175258-8244008:- -0.35 -6.48 2.35E-10 Box Plot
THCA rs5029785 chr2:132192670 T/C CCDC74B chr2:130896860-130902707:- 0.37 6.67 7.29E-11 Box Plot
THCA rs5030956 chr6:27213969 G/C ZNF322B chr9:99957633-99961910:- -0.4 -6.23 1.01E-9 Box Plot
THCA rs504697 chr6:44220076 C/T HSP90AB2P chr4:13335038-13340281:+ -0.74 -15.12 1.73E-42 Box Plot
THCA rs507396 chr5:49559208 G/A LOC647121 chr1:121260910-121313686:+ -0.36 -7.64 1.17E-13 Box Plot
THCA rs508138 chr2:119468445 G/C CHRM5 chr15:34260921-34359658:+ 0.29 5.87 8.03E-9 Box Plot
THCA rs510897 chr5:49558851 T/G LOC647121 chr1:121260910-121313686:+ -0.36 -7.64 1.17E-13 Box Plot
THCA rs511188 chr5:49544251 C/T LOC647121 chr1:121260910-121313686:+ -0.36 -7.64 1.17E-13 Box Plot
THCA rs515246 chr6:11603037 A/G GAR1 chr4:110736666-110745896:+ -0.23 -6.04 3.04E-9 Box Plot
THCA rs515246 chr6:11603037 A/G MRPL33 chr2:27994584-28210954:+ -0.25 -6.2 1.21E-9 Box Plot
THCA rs515246 chr6:11603037 A/G THOC2 chrX:122734412-122866906:- -0.25 -6.26 8.53E-10 Box Plot
THCA rs515246 chr6:11603037 A/G UPF2 chr10:11962021-12085169:- -0.21 -5.88 7.76E-9 Box Plot